Enclosed is the package for locating well-conserved regions
within a pairwise alignment.

(see: Chao, K.-M., Hardison, R. C. and Miller, W. (1993)
      "Locating well-conserved regions within a pairwise alignment,"
      CABIOS, 9, 387-396.)

This package contains the following files:

README
Makefile
left-right.driver.c left-right.c (for determining the region containing
				      suboptimal alignments)
robust.driver.c robust.c (for robustness measures)
unique.driver.c unique.c (for uniqueness bits)
region_left-right.driver.c region_left-right.c
	(for constrained boundaries)

To make a compiled version under UNIX, type "make".