Enclosed is the package for local alignment:

(see: Chao, K.-M. and Miller, W., 1995, Linear-Space Algorithms 
that Build Local Alignments from Fragments, Algorithmica, 13: 106-134.)

This package contains the following files:

README
Makefile
list.h
db_list.h
lslist.c
ldb_slist.c
falign.c

To make a compiled version under UNIX, type "make".