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日期: Thu, 09 Nov 2017 08:22:10 +0800
寄件人: Kun-Mao Chao
主旨: [ACB] AlphaGo Zero

各位夥伴：

下星期的group meeting，胤竹所報告的主題是關於粒線體DNA，探討如何從NGS資料著手的序列分析方法。

尚未選定報告主題的同學，亦可考慮信末所列論文。

期中學業順利，時時健康喜悅！

坤茂

****** papers for your reference ******
　

1. Technology Feature | The singles seen: Sequencing gets specific
Alan Dove, Science  03 Nov 2017: Vol. 358, Issue 6363, pp. 677-679.

2. How are DNAs woven into chromosomes?
Kim Nasmyth, Science  03 Nov 2017: Vol. 358, Issue 6363, pp. 589-590.

3. Competing chromosomes explain junk DNA
Francis J. McNally, Science  03 Nov 2017: Vol. 358, Issue 6363, pp. 594-595.

4. Southern African ancient genomes estimate modern human divergence to 350,000 to 260,000 years ago
Carina M. Schlebusch et al., Science  03 Nov 2017: Vol. 358, Issue 6363, pp. 652-655.

5. Detecting evolutionary forces in language change
Mitchell G. Newberry et al., Nature, Published online: 01 November 2017, doi:10.1038/nature24455.

6. Dense and accurate whole-chromosome haplotyping of individual genomes
 David Porubsky et al., Nature Communications 8, 1293.

7. Algorithm for post-clustering curation of DNA amplicon data yields reliable biodiversity estimates
 Tobias Guldberg Frøslev et al., Nature Communications 8, 1188.

8. PLATO software provides analytic framework for investigating complexity beyond genome-wide association studies
 Molly A. Hall et al., Nature Communications 8, 1167.

9. Neptune: a bioinformatics tool for rapid discovery of genomic variation in bacterial populations.
 Marinier E et al., Nucleic Acids Res. 2017 Oct 13;45(18):e159.

10. Improved algorithmic complexity for the 3SEQ recombination detection algorithm.
 Lam HM, Ratmann O, Boni MF., Mol Biol Evol. 2017 Oct 3.

11. Designing small universal k-mer hitting sets for improved analysis of high-throughput sequencing.
 Orenstein Y et al., PLoS Comput Biol. 2017 Oct 2;13(10):e1005777.

12. Graphtyper enables population-scale genotyping using pangenome graphs.
 Eggertsson HP et al., Nat Genet. 2017 Nov;49(11):1654-1660.

13. The SeqAn C++ template library for efficient sequence analysis: A resource for programmers.
 Reinert K et al., J Biotechnol. 2017 Nov 10;261:157-168.

14. kWIP: The k-mer weighted inner product, a de novo estimator of genetic similarity.
 Murray KD, et al., PLoS Comput Biol. 2017 Sep 5;13(9):e1005727.