Enclosed is the package for aligning two sequences within
a specified diagonal band.

(see: Chao, K.-M., Pearson, W.R. and Miller, W. (1992)
      "Aligning two sequences within a specified diagonal band,"
      CABIOS, 8, 481-487.)

This package contains the following files:

README
Makefile
g_band.driver.c  g_band.c (for global alignments)
l_band.driver.c  l_band.c (for local alignments)

To make a compiled version, type "make".

Command examples: (Match score is 1)
g_band data/short1 data/short2 -15 15 -1.0 6.0 0.2 > out0
g_band data/human.1500 data/rabbit.1500 -50 50 -1.0 6.0 0.2 > out1
g_band data/liverwort.seq data/liv.revcomp.seq -100 100 -1.0 6.0 0.2 > out2