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Becuase of the high frequence of update of promat. I decide to stop update of this page until I have more time. I hope the next version will include three programs and several libaries. Moreover, I'd also collate some papers and databases and put them up.
由於最近程式更新相當頻繁，即日起，會先停止更新，等我有空時，再把最新的進度整理一下；預計會放上來的應該有三個程式和數個函式庫，然後整理一些論文和資料庫；有打算仿照某學長的網頁，採取日記的形式，不過考慮本人的惰性，什麼時候會實行就不一定了。
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CGAL - Computational Geometry Algorithms Library
The Computational Geometry Algorithms Library is a collaborative effort of several sites in Europe and Israel. The goal is to make the most important of the solutions and methods developed in computational geometry available to users in industry and academia in a C++ library. More generally, the goal is to provide easy access to useful, reliable geometric algorithms.
這裡提供絕大部分跟圖學還有計算幾何有關的函式庫，相當難用，不過它之所以複雜，正是因為它的強大；畢竟很多演算法要實作出來，還不如到這試試看。PDB - Protein Data Bank
The single worldwide repository for the processing and distribution of 3-D biological macromolecular structure data.
擁有 3D 座標的蛋白質資料庫；我所有的測試資料都是從這邊抓的。PDBsum
The PDBsum database contains summary information and derived data on entries in the Protein Data Bank (PDB). The summary information gives an at-a-glance overview of the contents of each PDB entry in terms of numbers of protein chains, ligands, metal ions, etc. The derived data include PROMOTIF analyses, summary PROCHECK statistics, links to CATH and other databases, etc.
這個站可以幫助你分析 PDB 的資料，不過我還沒有弄得很懂就是了。Protein Structure Basics by Bernhard Rupp
If you have some question about protein, amino acid, fold, motif, ... here are basic idea about them. Of course, if you want to knwo more information, I think this page isn't enough.
如果你對於蛋白質一些基本的知識，例如 amino acid, fold, motif, ... 還不是很了解的話，可以試試看這個網頁；不過這邊只有很基本的介紹，我只是參考這個網站來製做說明而已。Home Page for RasMol and OpenRasMol
RasMol is a program for molecular graphics visualisation originally developed by Roger Sayle. This site is provided for the convenience of users of RasMol and and software developers of open source versions of RasMol.
RasMol 是由 Roger Sayle 所開發的一個工具，你可以利用它來視覺化一個蛋白質的結構；強烈建議抓下來試用看看，大部分有關蛋白質網站上的圖，可能都是由這個工具產生的。UCSF Computer Graphics Laboratory Software
I get ksdssp (which implements Kabsch, W & Sander, C. (1983) Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features. Biopolymers 22, 2577-2637.) here.
我抓不到 Kabsch, W & Sander, C. (1983) Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features. Biopolymers 22, 2577-2637. 這篇論文，但是我在這個網站抓到了一個實作此方法的原始碼程式。Unilever Education Advanced Series - Protein
There are more advanced knowledge about protein.
這裡有更多有關蛋白質的說明，如果你覺得前面的連結不夠的話，可以看看這個。